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Steffen, Peter; Giegerich, Robert: Versatile and declarative dynamic programming using pair algebras. In: BMC Bioinformatics. Jg.6 H. 1. 2005
Inhalt
Overview
Algebraic dynamic programming by example
RNA secondary structure prediction
ADP methodology
Alphabet
Search space
Scoring
Objective
In-depth search space analysis
Table 1
Results and discussion
The product operation on evaluation algebras
Implementing the product operation
Efficiency discussion
Applications of product algebras
Application 1: Backtracing and co-optimal solutions
Application 2: Holistic search space analysis
Application 3: Optimization under lexicographic orderings
Application 4: Testing ambiguity
Limitations of the product operation
Conclusion
Methods
Appendix: "Reverse engineering" of dynamic programming algorithms
Authors' contributions
Acknowledgements
References