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Titel
Titel
Inhalt
Inhalt
Seite
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Im Dokument suchen
Reeder, Jens; Giegerich, Robert: Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. In: BMC Bioinformatics. Jg.5 H. 1. 2004
Inhalt
Our contributions
Results
Simple recursive pseudoknots
Anticipating the complexity of a DP algorithm
Canonization
Canonization rule 1
Canonization rule 2
Canonization rule 3
Canonical representatives
Evaluation of the class csr-PK
Better than optimal
Table 1
Predictive accuracy
Table 2
Table 3
Computational performance
Discussion
Bulges, triple crossing and kissing hairpins
Table 4
Folding long sequences
Conclusion
Methods
Choice of implementation method
RNA folding in ADP
Adding pseudoknots
Table 5
Availability
Authors' contribution
Additional material
Acknowledgement
References