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Titel
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Kaltenbach, Hans-Michael; Wilke, Andreas; Böcker, Sebastian: SAMPI: protein identification with mass spectra alignments. In: BMC Bioinformatics. Jg.8 H. 1. 2007
Inhalt
Results and discussion
Processing the raw spectra
Databases
Results
Conclusion
Methods
Spectra alignments
Peaks and peak lists
Scoring peaks and spectra
Example 1 (Peak counting)
Scoring schemes
Mass difference
Robust incorporation of intensities
Scoring gap peaks
Background model and significance of alignment scores
Weighted strings
Cleavage schemes
Example 2 (Fragmentation of a string)
Mass occurrence probabilities
Lemma 1 (Fragment probabilities)
Lemma 2
Alignment score distribution
Using significance as score
Authors' contributions
Acknowledgements
References