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Husemann, Peter; Stoye, Jens: Phylogenetic Comparative Assembly. In: Algorithms for Molecular Biology. Jg.5 H. 1. 2010
Inhalt
Methods
Matching contigs against a reference
Contig adjacency graph
Finding a tour through the graph
Fast adjacency discovery algorithm
Integrating additional information
Results and discussion
Datasets
Experimental setup
Assessing the difficulty of comparative assembly
Uniqueness of a linear order
Single reference based ordering
Evaluation
Implementation treecat
Comparison of PGA and treecat
Conclusions
Acknowledgements
Author details
Authors' contributions
Competing interests
References