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Twellmann, Thorsten: Data-driven analysis of dynamic contrast-enhanced magnetic resonance imaging data in breast cancer diagnosis. 2005
Inhalt
Introduction
Outline of this Thesis
Magnetic Resonance Imaging
Nuclear Magnetism
Spin Packets
T1/T2 Processes
Magnetic Resonance Imaging
Spatial Decomposition of MR Signals
T1/T2-Weighted Imaging Sequences
Multispectral Magnetic Resonance Imaging
Contrast Agents
Multislice and 3D Imaging
Summary
Dynamic Contrast-Enhanced MR Imaging in Breast Cancer Diagnosis
Anatomy and Disorders of the Breast
Dynamic Contrast-Enhanced MR Image Sequences
DCE-MRI Data Sets
Interpretation of DCE-MRI Data
Enhancement Patterns
Morphological Patterns
Challenges of DCE-MRI Data Interpretation
Computer Aided Diagnosis Systems
Model-Based Image Analysis
Pharmacokinetic Models
Three-Time-Points Method
Limitations of Model-Based Techniques
Data-Driven Image Analysis
Applications of Supervised Artificial Neural Networks
Applications of Unsupervised Artificial Neural Networks
Summary
Supervised Learning - Concepts, Algorithms and Evaluation
Concepts of Supervised Learning
Empirical Risk Minimisation
Structural Risk Minimisation
Support Vector Machine
Maximum Margin Hyperplanes
Kernel Functions
Hyperparameter Selection
Multi-Class Extensions
Output Calibration
Linear Discriminant Analysis
Local Sigmoid Map
Prototype Adaptation
Local Expert Adaptation
Classification of Unseen Examples
Assessment of Classification Performance
Confusion Matrix Based Model Assessment
Receiver Operating Characteristics
Lesion Detection
Detection of Lesions with ANNs
Preprocessing of Image Data
Training Data Selection
Feature Description
Adaptation of Predictors
Results
Results for the Munich Group
Results for the MARIBS Pool
Discussion
Tissue Characterisation with Artificial Neural Networks
Motivation
Data-Driven Pixel-Mapping Based on Supervised Learning
Setup for a Data-Driven Pixel-Mapping
Preprocessing of Image Data
Preparing Training Data
Adaptation of Multiclass Support Vector Machines
Adaptation of Local Sigmoid Maps
Evaluation
Results
Visualisation of Entire Image Volumes
Visualisation of Lesion Masses
Discussion
Adaptive Colour Scales for Comparison of Pixel-Mapping Techniques
Visualising Pixel-Mapping Functions
Colour-Scales Based on Spatial Topology
Colour-Scales Based on Signal Topology
Adaptive Colour Scales
Low-Dimensional Forms of Signal Spaces Based on Self-Organising Maps
Self-Organising Maps
Visualising Adaptive Colour Scales
Case Study: Comparison of Pixel-Mapping Techniques for DCE-MRI
Computing a Low-Dimensional Form of the DCE-MRI Signal Space
Results
Discussion
Image Fusion for DCE-MRI Data
Principal Component Analysis and Kernel Principal Component Analysis
Principal Component Analysis
Kernel Principal Component Analysis
Connection Between PCA and KPCA
Fusion of DCE-MR Image Sequences
Preprocessing
Setup I - Case-Specific Representation Spaces
Setup II - Domain-Specific Representation Spaces
Displaying Fused Images
Results
Setup I - Case-Specific Representation Spaces
Setup II - Domain-Specific Representation Spaces Based on PCA
Setup II - Domain-Specific Representation Spaces Based on KPCA
ROC Analysis
Discussion
Conclusion
Subsequent Steps in Data-Driven Analysis of DCE-MRI Data
Bibliography