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Steiner, Till: Artificial evolutionary development. 2010
Inhalt
Acknowledgements
Introduction
The Paradigm: Embryogenesis
Introduction
Building a Multicellular Organism
An Overview
Genes and Differential Gene Expression During Embryogenesis
Cellular Communication
The Four Stages of Embryogenesis
The Evolutionary Perspective on Embryogenesis
Summary
Simulation of Development
Introduction
Related Work
Dynamics of Development – Control Mechanisms
Cellular Simulation – Phenotypic Mechanisms
Discussion of Related Work
The Simulation Environment
Control Mechanisms
Phenotypic Mechanisms
Evolution Strategy
Graph-based Development
Introduction
Evolving Dynamical Motifs
Introduction
Experimental Setup
Results
Discussion
Developmental System Design
Introduction
Experiment S: The Simplified Setup
Experiment C: The Complete Setup
Fitness Function
Results
Discussion
Vector Field Embryogeny
Introduction
Evolving Differentiation
Introduction
Experimental Setup
Results
Discussion
Higher Level Principles of Development in Vector Field Embryogeny
Introduction
Hierarchy in Vector Field Embryogeny
Heterochrony in Vector Field Embryogeny
Allometry in Vector Field Embryogeny
Evolving Differentiation Using Two Stage Spatial Hierarchy
Evolving differentiation with and without allometry
Evolving Differentiation Using Hierarchy and Allometry
Evolving Differentiation Using Heterochrony
Discussion
Evolvability of Graph- and Vector Field Embryogeny-representations
Introduction
A Prerequisite: Strong Causality and the Genotype to Phenotype Map
A Phenotype for Dynamical Systems
Discrete Fields
Field Difference
Causality in Graph Based Modeling
Causality in Vector Field Embryogeny Based Modeling
Comparison of Graph Based and Vector Field Embryogeny Based Modeling
Discussion
Conclusion
G P Plots
Sequence Diagrams of the Artificial Development-Simulation Environment and the Vector Field Embryogeny Simulation
Bi-Linear Energy Calculation
Bibliography