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Dias Vieira Braga, Marília; Machado, Raphael; Ribeiro, Leonardo C.; Stoye, Jens: On the weight of indels in genomic distances. In: BMC Bioinformatics. Jg.12 H. Suppl 9: RECOMB-CG 2011. 2011
Inhalt
Genomes
Organizational operations
Content-modifying operations
Triangular inequality
Related work
The inversion-indel distance
The ghost-DCJ distance
The DCJ-indel and DCJ-substitution distances
The classical DCJ distance
Runs of unique markers and tight distance upper bounds
Establishing the triangular inequality
Results and discussion
Framework to assign weights in a hybrid model
The triangular inequality in the DCJ-indel and DCJ-substitution distances
The DCJ-indel distance
The DCJ-substitution distance
Discussion
Conclusions
Future work
Acknowledgements
Author details
Authors' contributions
Competing interests
References