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Dörr, Daniel ; Gronau, Ilan; Moran, Shlomo; Yavneh, Irad: Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions. In: Algorithms for Molecular Biology. Jg.7 H. 1. 2012
Inhalt
Background
Substitution Models
Substitution rate functions
Additive metrics, Affine-additive mappings, and Near-additivity
Local consistency
Deviation from additivity in homogeneous substitution models
Deviation of JC from Additivity in K2P
Performance of Non affine-additive SR functions in quartet resolution
Fisher's criterion for separability
Simulations on Hasegawa's Tree
Inferring trees from genomic sequences
The genomic data set
Reconstruction accuracy for ten-species subsets
Conclusions
Endnotes
Appendix
Tightness of Lemma 2.8.
Competing interests
Authors' contributions
Acknowledgements
Author details
References