de
en
Schliessen
Detailsuche
Bibliotheken
Projekt
Impressum
Datenschutz
zum Inhalt
Detailsuche
Schnellsuche:
OK
Ergebnisliste
Titel
Titel
Inhalt
Inhalt
Seite
Seite
Im Dokument suchen
Lux, Markus; Krüger, Jan; Rinke, Christian; Maus, Irena; Schlüter, Andreas ; Woyke, Tanja; Sczyrba, Alexander ; Hammer, Barbara: acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data. In: BMC Bioinformatics. Jg.17 H. 1. 2016
Inhalt
Background
Implementation
Reference-free detection
1. Data pre-processing
2. Dimensionality reduction
3. Estimation of contamination confidences
Reference-based detection
4. Sequence classification
5. 16S rRNA gene prediction
Post-processing
6. Cleansing
7. Result visualization
Computational performance
Results
Supervised analysis
Unsupervised analysis
Conclusions
Availability and requirements
Additional file
Additional file 1
Abbreviations
Acknowledgements
Funding
Availability of data and material
Authors' contributions
Competing interests
Consent for publication
Ethics approval and consent to participate
Author details
References