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Müller, Robert ; Nebel, Markus: GeFaST: An improved method for OTU assignment by generalising Swarm’s fastidious clustering approach. In: BMC Bioinformatics. Jg.19 H. 1. 2018
Inhalt
Swarm clustering
Pass-Join
Implementation
Implementation details.
Segment filter.
Non-fastidious clustering.
Fastidious clustering.
Edit-distance mode.
Verification
Results
Evaluation of clustering quality
Clustering mock-community data
Clustering natural data
Performance evaluation
Iterative clustering for different thresholds.
Iterative clustering for different data set sizes.
Iterative versus classic de novo clustering.
Discussion
Conclusions
Availability and requirements
Additional file
Additional file 1
Additional file 2
Additional file 3
Additional file 4
Abbreviations
Acknowledgements
Funding
Availability of data and material
Authors' contributions
Ethics approval and consent to participate
Consent for publication
Competing interests
Publisher's Note
Author details
References