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Studies in Analytical Reproducibility: the Conquaire Project. 2021
Inhalt
Preface
Introduction
Motivation
Overview of Conquaire Infrastructure and Workflow
Case Studies in Computational Reproducibility
Analysis
Levels of Reproducibility
Data formats used by case study partners
Tools used by case study partners
Reproducibility Analysis
Summary
Bibliography
Conquaire Infrastructure for Continuous Quality Control
Introduction
Why we use Git and GitLab
Git
GitLab
Conquaire Continuous Quality Control Infrastructure
Overview
Example of pre-configured YAML file
Quality checks
Summary
Reproducibility of whole-body movement analyses of insects
Introduction
Methods
Data workflow: acquisition and processing pipeline
Data acquisition: Experimental procedure
Manual editing and annotation
Secondary processing: Whole-body kinematics
Analytical Reproducibility
Analysis pipeline, data formats and software tools
Technical Challenges and Issues
Conclusion
Bibliography
Reproducing Trajectory Analysis of Bumblebee Exploration Flights
Introduction
Experiment settings and data acquisition pipeline
Computational Environment for Reproducibility
Software Migration
Virtualization
Continuous Integration supporting quality control
Conclusion
Bibliography
Reproducing experiments of ice nucleation in atmospheric chemistry
Introduction
Methods
Experiment settings and Data acquisition pipeline
Methods applied to analyze the experimental data
Main Results
Analytical Reproducibility
Research Data - Primary
Research Data - Analyzed and Processed
Data Workflow Lifecycle
Summary of Reproducibility Experiment
Conclusion
Bibliography
Visualization of economic agent-based simulations
Introduction
Methods
The FLAME Environment
Simulation Data
Analytical Reproducibility
Data Analysis Pipeline
Plotting with FLAViz
Summary and limitations
Conclusion
Bibliography
Reproducing experiments on early verb understanding in infants
Introduction
Methods
Experimental settings and data acquisition pipeline
Methods applied to analyze the data
Main Results
Analytical Reproducibility
Data Workflow Lifecycle
Reproducibility Results
Summary of computational reproduction experiment
Conclusion
Bibliography
Reproducing an experiment in automatic disfluency detection
Introduction
Methods
Analytical Reproducibility
Summary of reproducibility experiment
Conclusion
Bibliography
Reproducing the analysis of sequential visual processing
Introduction
Methods
Experiment settings and Data acquisition pipeline
Methods applied to analyze the experiment data
Analytical Reproducibility
Research Data
Analytical Reproducibility status
Discussion of reproducibility experiment
Conclusion
Bibliography
Reproducibility in Human-Robot Interaction Research: A Case Study
Introduction
Experimental Settings and Methods
The JSE Experiment
Replication in Indiana
Analytical Reproducibility: Results & Lessons Learned
Technical Obstacles & Procedural Issues
Results of the Pilot Study on Reproducibility in HRI
Analysis of reproducibility experiment
Conclusion
Bibliography
Conclusion
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