TY  - JOUR
AB  - Identification of potential cis-regulatory motifs controlling the development of C-4 photosynthesis is a major focus of current research. In this study, we used time-series RNA-seq data collected from etiolated maize and rice leaf tissues sampled during a de-etiolation process to systematically characterize the expression patterns of C-4-related genes and to further identify potential cis elements in five different genomic regions (i.e. promoter, 5'UTR, 3'UTR, intron, and coding sequence) of C-4 orthologous genes. The results demonstrate that although most of the C-4 genes show similar expression patterns, a number of them, including chloroplast dicarboxylate transporter 1, aspartate aminotransferase, and triose phosphate transporter, show shifted expression patterns compared with their C-3 counterparts. A number of conserved short DNA motifs between maize C-4 genes and their rice orthologous genes were identified not only in the promoter, 5'UTR, 3'UTR, and coding sequences, but also in the introns of core C4 genes. We also identified cis-regulatory motifs that exist in maize C-4 genes and also in genes showing similar expression patterns as maize C-4 genes but that do not exist in rice C-3 orthologs, suggesting a possible recruitment of pre-existing cis-elements from genes unrelated to C-4 photosynthesis into C-4 photosynthesis genes during C-4 evolution.
DA  - 2016
DO  - 10.1093/jxb/erw275
KW  - C-4 photosynthesis
KW  - cell specificity
KW  - cis element
KW  - evolution
KW  - etiolation
KW  - systems biology
LA  - eng
IS  - 17
M2  - 5105
PY  - 2016
SN  - 0022-0957
SP  - 5105-5117
T2  - Journal of Experimental Botany
TI  - Systems analysis of cis-regulatory motifs in C-4 photosynthesis genes using maize and rice leaf transcriptomic data during a process of de-etiolation
UR  - https://nbn-resolving.org/urn:nbn:de:0070-pub-29151266
Y2  - 2024-11-21T21:46:01
ER  -