TY  - JOUR
AB  - In this work we present new concepts of VANESA, a tool for modeling and simulation in systems biology. We provide a convenient way to handle mathematical expressions and take physical units into account. Simulation and result management has been improved, and syntax and consistency checks, based on physical units, reduce modeling errors. As a proof of concept, essential components of the aerobic carbon metabolism of the green microalga Chlamydomonas reinhardtii are modeled and simulated. The modeling process is based on xHPN Petri net formalism and simulation is performed with OpenModelica, a powerful environment and compiler for Modelica. VANESA, as well as OpenModelica, is open source, free-of-charge for non-commercial use, and is available at: http://agbi.techfak.uni-bielefeld.de/vanesa.
DA  - 2018
DO  - 10.1515/jib-2018-0018
KW  - petri net
KW  - Chlamydomonas reinhardtii
LA  - eng
IS  - 3
PY  - 2018
SN  - 1613-4516
T2  - Journal of Integrative Bioinformatics
TI  - Modeling and Simulating the Aerobic Carbon Metabolism of a Green Microalga Using Petri Nets and New Concepts of VANESA
UR  - https://nbn-resolving.org/urn:nbn:de:0070-pub-29310640
Y2  - 2024-11-22T03:38:44
ER  -