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Schäfers, Sonja: Annexin A2 in membrane microdomain organisation and influenza A infection. 2010
Inhalt
1 Abstract
2 Introduction
2.1 The influenza A virus
2.1.1 Pathogen-host interactions
2.1.2 General properties of the influenza A virus
2.1.3 The influenza A replication cycle
2.1.4 Influenza A and apoptosis
2.2 Annexin A2
2.2.1 The annexin protein family
2.2.2 Specific properties and functions of annexin A2
2.2.2.1 The annexin A2/p11 complex
2.2.2.2 Annexin A2 localisation
2.2.2.3 Binding of annexin A2 to membrane microdomains and the cytoskeleton
2.2.2.4 Posttranslational modifications of annexin A2
2.2.2.5 Annexin A2 and pathogens
2.3 Aim of this thesis
3 Materials and Methods
3.1 Materials
3.1.1 Virus strains
3.1.2 Bacterial strains
3.1.3 Eukaryotic cell lines
3.1.4 Plasmids
3.1.5 Oligonucleotides
3.1.6 Enzymes
3.1.7 Antibodies
3.1.8 Kits
3.1.9 Chemicals and reagents
3.1.10 Other materials and equipment
3.2 Cellbiological methods
3.2.1 Cell culture
3.2.2 Freezing cells
3.2.3 Thawing cells
3.2.4 Transient transfection of eukaryotic cells
3.2.4.1 Plasmid transfection
3.2.4.2 siRNA transfection
3.2.5 Immunofluorescence
3.2.6 Induction and microscopy of PMSs
3.2.7.1 Tissue culture for microscopy
3.2.7.2 Microscopy
3.2.7.3 Image analysis
3.2.8 Flow cytometry
3.3 Proteinbiochemical methods
3.3.1 Preparation of cellular protein extracts
3.3.2 Triton solubilisation
3.3.3 DRM flotation gradient
3.3.4 Protein quantification
3.3.5 Protein precipitation with TCA
3.3.6 SDS-PAGE
3.3.7 Western blotting
3.3.8 Stripping of blot membranes
3.4 Molecular biological methods
3.4.1 Bacterial methods
3.4.1.1 Cultivation and long term storage of bacteria
3.4.1.2 Preparation of CaCl2-competent E. coli DH5
3.4.1.3 Transformation of CaCl2 competent E. coli DH5
3.4.2 Methods of DNA preparation
3.4.2.1 Isolation and determination of plasmid DNA
3.4.2.2 Agarose gel electrophoresis
3.4.2.3 Elution of DNA from agarose gels
3.4.3 Enzymatic DNA methods
3.4.3.1 Restriction digests
3.4.3.2 Ligation of DNA fragments
3.4.3.3 PCR
3.4.3.4 Colony PCR
3.4.3.5 Sequencing of DNA
3.4.3.6 Real-time PCR
3.4.4 Cloning of mCherry labelled annexin A2 constructs
3.5 Virological methods
3.5.1 Viral infection of cells
3.5.2 Plaque assay
3.5.3 Influenza virus propagation
3.5.3.1 Propagation of FPV in MDCK
3.5.3.2 Propagation of PR8 in embryonated chicken eggs
3.5.4 Influenza virus purification
4 Results
4.1 Role of annexin A2 in IAV infection
4.1.1 Annexin A2 dependency of IAV replication
4.1.1.1 IAV replication in XM expressing cells
4.1.1.2 IAV replication in annexin A2 siRNA transfected cells
4.1.1.3 IAV replication in CMECs from an annexin A2 knockout mouse
4.1.2 Real-time PCR analysis of annexin A1 and annexin A2 after IAV infection
4.1.3 Hemagglutinin localisation in annexin A2 depleted cells
4.1.4 Annexin A2 and FPV localisation in infected cells
4.1.5 Annexin A2 incorporation in IAV particles
4.2 Involvement of annexin A2 in apoptotic processes
4.3 Association of annexin A2 with membrane microdomains
4.3.1 Cell fractionation by DRM flotation gradient
4.3.2 Influence of Tyr23 phosphorylation and PI(4,5)P2-binding on the association of annexin A2 with membrane microdomains
4.3.3 Influence of p11- and Ca2+- binding on the association of annexin A2 with membrane microdomains
4.3.4 Laurdan 2photon microscopy of annexin A2 expressing cells
5 Discussion
5.1 Annexin A2 in IAV infection
5.2 Annexin A2 in apoptotic processes
5.3 Annexin A2 association with membrane microdomains
5.3.1 DRM association of annexin A2 mutants
5.3.2 Localisation of annexin A2 in the GM1 phase of PMSs
5.3.3 Laurdan 2photon analysis of cells expressing annexin A2 variants
6 References
7 Appendix
7.1 Abbreviations
7.2 Supplementary data
Conference Presentations
Curriculum Vitae
Acknowledgements