TY  - JOUR
AB  - Imaging techniques are a cornerstone of contemporary biology. Over the last decades, advances in microscale imaging techniques have allowed fascinating new insights into cell and tissue morphology and internal anatomy of organisms across kingdoms. However, most studies so far provided snapshots of given reference taxa, describing organs and tissues under “idealized” conditions. Surprisingly, there is an almost complete lack of studies investigating how an organism′s internal morphology changes in response to environmental drivers. Consequently, ecology as a scientific discipline has so far almost neglected the possibilities arising from modern microscale imaging techniques. Here, we provide an overview of recent developments of X-ray computed tomography as an affordable, simple method of high spatial resolution, allowing insights into three-dimensional anatomy both in vivo and ex vivo. We review ecological studies using this technique to investigate the three-dimensional internal structure of organisms. In addition, we provide practical comparisons between different preparation techniques for maximum contrast and tissue differentiation. In particular, we consider the novel modality of phase contrast by self-interference of the X-ray wave behind an object (i.e., phase contrast by free space propagation). Using the cricket Acheta domesticus (L.) as model organism, we found that the combination of FAE fixative and iodine staining provided the best results across different tissues. The drying technique also affected contrast and prevented artifacts in specific cases. Overall, we found that for the interests of ecological studies, X-ray computed tomography is useful when the tissue or structure of interest has sufficient contrast that allows for an automatic or semiautomatic segmentation. In particular, we show that reconstruction schemes which exploit phase contrast can yield enhanced image quality. Combined with suitable specimen preparation and automated analysis, X-ray CT can therefore become a promising quantitative 3D imaging technique to study organisms′ responses to environmental drivers, in both ecology and evolution.
AU  - Gutiérrez, Yeisson
AU  - López Gutiérrez, Yeisson
AU  - Ott, David
AU  - Töpperwien, Mareike
AU  - Salditt, Tim
AU  - Scherber, Christoph
DA  - 2018-04-04
DO  - 10.1002/ece3.4149
KW  - μ-CT
KW  - anatomy
KW  - animal imaging
KW  - computed tomography
KW  - internal morphology
LA  - eng
N1  - Ecology and Evolution 8 (2018) 15, 7717–7732
N1  - Finanziert durch den Open-Access-Publikationsfonds 2018 der Deutschen Forschungsgemeinschaft (DFG) und der Westfälischen Wilhelms-Universität Münster (WWU Münster).
PY  - 2018-04-04
TI  - X‐ray computed tomography and its potential in ecological research: A review of studies and optimization of specimen preparation
UR  - https://nbn-resolving.org/urn:nbn:de:hbz:6-36159589817
Y2  - 2024-12-26T07:41:11
ER  -