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acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
Lux, Markus ; Krüger, Jan ; Rinke, Christian ; Maus, Irena ; Schlüter, Andreas ; Woyke, Tanja ; Sczyrba, Alexander ; Hammer, BarbaraIn: BMC Bioinformatics, Jg. 17 H. 1Biphasic Study to Characterize Agricultural Biogas Plants by High-Throughput 16S rRNA Gene Amplicon Sequencing and Microscopic Analysis
Maus, Irena ; Kim, Yong Sung ; Wibberg, Daniel ; Stolze, Yvonne ; Off, Sandra ; Antonczyk, Sebastian ; Pühler, Alfred ; Scherer, Paul ; Schlüter, AndreasIn: Journal of Microbiology and Biotechnology, Jg. 27 H. 2, S. 321-334Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions
Stolze, Yvonne ; Zakrzewski, Martha ; Maus, Irena ; Eikmeyer, Felix Gregor ; Jaenicke, Sebastian ; Rottmann, Nils ; Siebner, Clemens ; Pühler, Alfred ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 8 H. 1Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation
Schröder, Jasmin ; Maus, Irena ; Trost, Eva ; Tauch, AndreasIn: BMC Genomics, Jg. 12 H. 1Complete Genome Sequence of Herbinix luporumSD1D, a New Cellulose-Degrading Bacterium Isolated from a Thermophilic Biogas Reactor
Koeck, Daniela E. ; Maus, Irena ; Wibberg, Daniel ; Winkler, Anika ; Zverlov, Vladimir V. ; Liebl, Wolfgang ; Pühler, Alfred ; Schwarz, Wolfgang H. ; Schlüter, AndreasIn: Genome Announcements, Jg. 4 H. 4, S. e00687-16Complete Genome Sequence of the Clinical Strain Acinetobacter baumannii R2090 Carrying the Chromosomally Encoded Metallo-β-Lactamase GeneblaNDM-1
Krahn, Thomas ; Wibberg, Daniel ; Maus, Irena ; Winkler, Anika ; Nordmann, Patrice ; Pühler, Alfred ; Poirel, Laurent ; Schlüter, AndreasIn: Genome Announcements, Jg. 3 H. 5Complete Genome Sequence of the MethanogenMethanoculleus bourgensisBA1 Isolated from a Biogas Reactor
Maus, Irena ; Wibberg, Daniel ; Winkler, Anika ; Pühler, Alfred ; Schnürer, Anna ; Schlüter, AndreasIn: Genome Announcements, Jg. 4 H. 3Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient
Schröder, Jasmin ; Maus, Irena ; Meyer, Katja ; Wördemann, Stephanie ; Blom, Jochen ; Jaenicke, Sebastian ; Schneider, Jessica ; Trost, Eva ; Tauch, AndreasIn: BMC Genomics, Jg. 13 H. 1Deeply sequenced metagenome and metatranscriptome of a biogas-producing microbial community from an agricultural production-scale biogas plant
Bremges, Andreas ; Maus, Irena ; Belmann, Peter ; Eikmeyer, Felix Gregor ; Winkler, Anika ; Albersmeier, Andreas ; Pühler, Alfred ; Schlüter, Andreas ; Sczyrba, AlexanderIn: GigaScience, Jg. 4 H. 1Detailed analysis of metagenome datasets obtained from biogas-producing microbial communities residing in biogas reactors does not indicate the presence of putative pathogenic microorganisms
Eikmeyer, Felix Gregor ; Rademacher, Antje ; Hanreich, Angelika ; Hennig, Magdalena ; Jaenicke, Sebastian ; Maus, Irena ; Wibberg, Daniel ; Zakrzewski, Martha ; Pühler, Alfred ; Klocke, Michael ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 6 H. 1Draft Genome Sequence of Propionisporasp. Strain 2/2-37, a New Xylan-Degrading Bacterium Isolated from a Mesophilic Biogas Reactor
Koeck, Daniela E. ; Maus, Irena ; Wibberg, Daniel ; Winkler, Anika ; Zverlov, Vladimir V. ; Liebl, Wolfgang ; Pühler, Alfred ; Schwarz, Wolfgang H. ; Schlüter, AndreasIn: Genome Announcements, Jg. 4 H. 3, S. e00609-16Genome Analyses and Genome-Centered Metatranscriptomics of Methanothermobacter wolfeii Strain SIV6, Isolated from a Thermophilic Production-Scale Biogas Fermenter
Hassa, Julia ; Wibberg, Daniel ; Maus, Irena ; Pühler, Alfred ; Schlüter, AndreasIn: Microorganisms, Jg. 8 H. 1Genomics and prevalence of bacterial and archaeal isolates from biogas-producing microbiomes
Maus, Irena ; Bremges, Andreas ; Stolze, Yvonne ; Hahnke, Sarah ; Cibis, Katharina G. ; Koeck, Daniela E. ; Kim, Yong S. ; Kreubel, Jana ; Hassa, Julia ; Wibberg, Daniel ; Weimann, Aaron ; Off, Sandra ; Stantscheff, Robbin ; Zverlov, Vladimir V. ; Schwarz, Wolfgang H. ; König, Helmut ; Liebl, Wolfgang ; Scherer, Paul ; McHardy, Alice C. ; Sczyrba, Alexander [...]In: Biotechnology for Biofuels, Jg. 10 H. 1Identification and genome reconstruction of abundant distinct taxa in microbiomes from one thermophilic and three mesophilic production-scale biogas plants
Stolze, Yvonne ; Bremges, Andreas ; Rumming, Madis ; Henke, Christian ; Maus, Irena ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Biotechnology for Biofuels, Jg. 9 H. 1Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics
Maus, Irena ; Klocke, Michael ; Derenkó, Jaqueline ; Stolze, Yvonne ; Beckstette, Michael ; Jost, Carsten ; Wibberg, Daniel ; Blom, Jochen ; Henke, Christian ; Willenbücher, Katharina ; Rumming, Madis ; Rademacher, Antje ; Pühler, Alfred ; Sczyrba, Alexander ; Schlüter, AndreasIn: Environmental Microbiome, Jg. 15 H. 1Importance of Defluviitalea raffinosedens for Hydrolytic Biomass Degradation in Co-Culture with Hungateiclostridium thermocellum
Rettenmaier, Regina ; Schneider, Martina ; Munk, Bernhard ; Lebuhn, Michael ; Jünemann, Sebastian ; Sczyrba, Alexander ; Maus, Irena ; Zverlov, Vladimir ; Liebl, WolfgangIn: Microorganisms, Jg. 8 H. 6Phage Genome Diversity in a Biogas-Producing Microbiome Analyzed by Illumina and Nanopore GridION Sequencing
Willenbücher, Katharina ; Wibberg, Daniel ; Huang, Liren ; Conrady, Marius ; Ramm, Patrice ; Gätcke, Julia ; Busche, Tobias ; Brandt, Christian ; Szewzyk, Ulrich ; Schlüter, Andreas ; Barrero Canosa, Jimena ; Maus, IrenaIn: Microorganisms, Jg. 10 H. 2The Role of Petrimonas mucosa ING2-E5AT in Mesophilic Biogas Reactor Systems as Deduced from Multiomics Analyses
Maus, Irena ; Tubbesing, Tom Jonas ; Wibberg, Daniel ; Heyer, Robert ; Hassa, Julia ; Tomazetto, Geizecler ; Huang, Liren ; Bunk, Boyke ; Spröer, Cathrin ; Benndorf, Dirk ; Zverlov, Vladimir ; Pühler, Alfred ; Klocke, Michael ; Sczyrba, Alexander ; Schlüter, AndreasIn: Microorganisms, Jg. 8 H. 12